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- Gergely Katona
Gergely Katona
Professor
Department of Chemistry & Molecular BiologyAbout Gergely Katona
Structural biology
Our research group specializes in crystallographic investigations, with a particular emphasis on exploring the dynamic states of proteins. While this technique has proven invaluable, its technical limitations have made it challenging to study proteins and enzymes in action. To address this hurdle, our team has pioneered the use of chemical and physical triggering and trapping techniques, enabling us to examine reacting enzymes at various intermediate states. Once these states are successfully established, we employ a range of X-ray techniques to delve into their molecular structures.
Our studies offer dual benefits. Firstly, they contribute to the advancement of cutting-edge techniques specifically designed for studying enzymes engaged in catalytic activity. This aspect is crucial as it paves the way for future investigations in this field. Secondly, our findings provide valuable insights into the intricate workings of specific enzymes, enhancing our understanding of their functional mechanisms.
For more detailed information about our research and the exciting projects we undertake, explore Gergely's research website at .
Artificial Intelligence and Machine Learning
Gergely Katona started his work in the field of AI in projects relating to measurement of crystallographic data. This specialized field of science has vast applications in time-resolved structural determination and single wavelength anomalous diffraction (SAD). He also used advanced Bayesian methods for more accurate and efficient data analysis in biophysical experiments, such as microscale thermophoresis (MST), biolayer interferometry (BLI), and nuclear magnetic resonance spectroscopy (NMR), in order to e.g. predict how these experiments would evolve over time or with changes in ligand concentration. Other exciting applications of artificial intelligence in the field of biomedicine involves cancer and inflammatory diseases, with focus on the protein survivin, which plays a crucial role in various diseases. By using neural networks, Gergely was able to identify the peptides that could interact best with survivin, allowing researchers to develop more effective treatments. This work has also led to the registration of a patent related to the discovery of suitable peptides targeting specific proteins and biological functions, as well as the prediction of the fitness of mutations.
Gergely holds the position of Chairman of the Chemistry Program Committee and serves as the main examiner for the field of Chemistry.
Additionally, Gergely is actively involved in teaching various courses, including:
- KEM350: Design and Production of Biomolecules
- KEM360: Biomolecular Structure and Dynamics
- KEM011: Basic Chemistry
- KER210: Analytical Pharmaceutical Chemistry
- KMB056: Molecular Biotechnology
Moreover, Gergely takes on the responsibility of supervising doctoral, master, and bachelor students, focusing on their training in method development and equipping them with universal skills to conduct independent research.
Furthermore, Gergely undertakes the task of reviewing applications for the iNEXT network and beamlines at EMBL Hamburg.
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Venkataragavan Chandrasekaran, Karin Andersson, Malin Erlandsson, Shuxiang Li, Torbjörn Nur Olsson, Maria-Jose Garcia-Bonete, Eric Malmhäll-Bah, Pegah Johansson, Gergely Katona, Maria Bokarewa
CELL COMMUNICATION AND SIGNALING - 2024 -
Adams Vallejos, Gergely Katona, Richard Neutze
STRUCTURAL DYNAMICS-US - 2024 -
Atsarina Larasati Anindya, Torbjörn Nur Olsson, Maja Jensen, Maria-Jose Garcia-Bonete, Sally P. Wheatley, Maria Bokarewa, Stefano A. Mezzasalma, Gergely Katona
MACHINE LEARNING-SCIENCE AND TECHNOLOGY - 2024 -
Christian V Recktenwald, Göran Karlsson, Maria-Jose Garcia-Bonete, Gergely Katona, Maja Jensen, Richard Lymer, Malin Bäckström, Malin E V Johansson, Gunnar C. Hansson, Sergio Trillo-Muyo
Cell Reports - 2024 -
Maja Jensen, Venkataragavan Chandrasekaran, Maria-Jose Garcia-Bonete, S. X. Li, Atsarina Larasati Anindya, Karin Andersson, Malin Erlandsson, Nina Oparina, Björn Marcus Burmann, Ulrika Brath, A. R. Panchenko, Maria Bokarewa, Gergely Katona
Iscience - 2023 -
Malin Erlandsson, Karin Andersson, Nina Oparina, Venkataragavan Chandrasekaran, Tibor Saghy, Anastasios Damdimopoulos, Maria-Jose Garcia-Bonete, Zakaria Einbeigi, Sofia Töyrä Silfverswärd, Marcela Pekna, Gergely Katona, Maria Bokarewa
i91̽»¨ - 2022 -
Atsarina Larasati Anindya, Maria-Jose Garcia-Bonete, Maja Jensen, Christian V Recktenwald, Maria Bokarewa, Gergely Katona
Digital Discovery - 2022 -
Venkataragavan Chandrasekaran, N. Oparina, Maria-Jose Garcia-Bonete, C. Wasen, Malin Erlandsson, Eric Malmhäll-Bah, Karin Andersson, Maja Jensen, Sofia Töyrä Silfverswärd, Gergely Katona, Maria Bokarewa
Frontiers in Immunology - 2022 -
Robert Dods, Petra Båth, Dmitry Morozov, Viktor Ahlberg Gagnér, David Arnlund, Hoi Ling Luk, Joachim Kübel, Michal Maj, Adams Vallejos, Cecilia Wickstrand, Robert Bosman, Kenneth R Beyerlein, Garrett Nelson, Mengning Liang, Despina Milathianaki, Joseph Robinson, Rajiv Harimoorthy, Peter Berntsen, Erik Malmerberg, Linda C Johansson, Rebecka Andersson, Sergio Carbajo, Elin Claesson, Chelsie E Conrad, Peter Dahl, Greger Hammarin, Mark S Hunter, Chufeng Li, Stella Lisova, Antoine Royant, Cecilia Safari, Amit Sharma, Garth J Williams, Oleksandr Yefanov, Sebastian Westenhoff, Jan Davidsson, Daniel P DePonte, Sébastien Boutet, Anton Barty, Gergely Katona, Gerrit Groenhof, Gisela Brändén, Richard Neutze
Nature - 2021 -
Maja Jensen, Viktor Ahlberg Gagnér, Juan Cabello Sánchez, Åsa U J Bengtsson, J Carl Ekström, Tinna Björg Úlfarsdóttir, Maria-Jose Garcia-Bonete, Andrius Jurgilaitis, David Kroon, Van Thai Pham, Stefano Checcia, Hélène Coudert-Alteirac, Siawosch Schewa, Manfred Rössle, Helena Rodilla, Jan Stake, Vitali Zhaunerchyk, Jörgen Larsson, Gergely Katona
Journal of synchrotron radiation - 2021 -
S. D. Winter, H. B. L. Jones, D. M. Răsădean, R. M. Crean, M. J. Danson, G. D. Pantoş, Gergely Katona, E. Prentice, V. L. Arcus, M. W. van der Kamp, C. R. Pudney
ACS Catalysis - 2021 -
Viktor Ahlberg Gagnér, Maja Jensen, Gergely Katona
Machine Learning-91̽»¨ and Technology - 2021 -
K. Nass, L. Redecke, M. Perbandt, O. Yefanov, M. Klinge, R. Koopmann, F. Stellato, A. Gabdulkhakov, R. Schonherr, D. Rehders, J. M. Lahey-Rudolph, A. Aquila, A. Barty, S. Basu, R. B. Doak, R. Duden, M. Frank, R. Fromme, S. Kassemeyer, Gergely Katona, R. Kirian, H. Liu, I. Majoul, J. M. Martin-Garcia, M. Messerschmidt, R. L. Shoeman, U. Weierstall, Sebastian Westenhoff, T. A. White, G. J. Williams, C. H. Yoon, N. Zatsepin, P. Fromme, M. Duszenko, H. N. Chapman, C. Betzel
Nature Communications - 2020 -
Cecilia Wickstrand, Gergely Katona, T. Nakane, P. Nogly, J. Standfuss, E. Nango, Richard Neutze
Structural Dynamics - 2020 -
S. Schewa, M. A. Schroer, T. Zickmantel, Y. H. Song, C. E. Blanchet, A. Y. Gruzinov, Gergely Katona, D. I. Svergun, M. Roessle
Review of Scientific Instruments - 2020 -
Maria-Jose Garcia-Bonete, Gergely Katona
Acta Crystallographica a-Foundation and Advances - 2019 -
Maria-Jose Garcia-Bonete, Maja Jensen, Gergely Katona
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology - 2019 -
Viktor Ahlberg Gagnér, Ida Lundholm, Maria-Jose Garcia-Bonete, Helena Rodilla, Vitali Zhaunerchyk, Gleb Bourenkov, Thomas Schneider, Jan Stake, Gergely Katona
Scientific reports - 2019 -
Amit Sharma, Linda C Johansson, Elin Dunevall, Weixiao Yuan Wahlgren, Richard Neutze, Gergely Katona
Acta Crystallographica a-Foundation and Advances - 2017 -
Giacomo Gravina, Caroline Wasén, Maria-Jose Garcia-Bonete, Minna Turkkila, Malin Erlandsson, Sofia Silfverswärd Lindblad, Mikael Brisslert, Rille Pullerits, Karin Andersson, Gergely Katona, Maria Bokarewa
Autoimmunity reviews - 2017 -
Maria-Jose Garcia-Bonete, Maja Jensen, Christian V Recktenwald, Sandra Rocha, Volker Stadler, Maria Bokarewa, Gergely Katona
Scientific reports - 2017 -
Péter Ecsédi, Bence Kiss, Gergő Gógl, László Radnai, László Buday, Kitti Koprivanacz, Károly Liliom, Ibolya Leveles, Beáta Vértessy, Norbert Jeszenői, Csaba Hetényi, Gitta Schlosser, Gergely Katona, László Nyitray
Structure (London, England : 1993) - 2017 -
Gergely Katona, Maria-Jose Garcia-Bonete, Ida Lundholm
Acta Crystallographica a-Foundation and Advances - 2016 -
Gergely Katona, Ida Lundholm, H. Rodilla, Maria-Jose Garcia-Bonete, Annette Duelli, Weixiao Yuan Wahlgren, G. Bourenkov, J. Vukusic, R. Friedman, T. Schneider, J. Stake
41st International Conference on Infrared, Millimeter, and Terahertz Waves (IRMMW-THz). SEP 25-30, 2016 .Copenhagen, Denmark. - 2016 -
Joakim H. Bergström, George M. H. Birchenough, Gergely Katona, Björn O. Schröder, André Schütte, Anna Ermund, Malin E V Johansson, Gunnar C. Hansson
Proceedings of the National Academy of 91̽»¨s of the United States of America - 2016 -
Gergö Gógl, Anita Alexa, Bence Kiss, Gergely Katona, Mihály Kovács, Andrea Bodor, Attila Reményi, László Nyitray
The Journal of biological chemistry - 2016 -
Ida Lundholm, Helena Rodilla, Weixiao Yuan Wahlgren, Annette Duelli, Gleb Bourenkov, Josip Vukusic, Ran Friedman, Jan Stake, Thomas Schneider, Gergely Katona
Structural Dynamics - 2015 -
Karin Andersson, Mikael Brisslert, Nicola Cavallini, Mattias Svensson, Amanda Welin, Malin Erlandsson, M. J. Ciesielski, Gergely Katona, Maria Bokarewa
Oncotarget - 2015 -
L. Graf, T. Molnar, J. Kardos, Z. Gaspari, Gergely Katona
Current Protein & Peptide 91̽»¨ - 2015 -
Erik Malmerberg, P. H. M. Bovee-Geurts, Gergely Katona, X. Deupi, David Arnlund, Cecilia Wickstrand, Linda C Johansson, Sebastian Westenhoff, Elena Nazarenko, G. F. X. Schertler, A. Menzel, W. J. de Grip, Richard Neutze
91̽»¨ Signaling - 2015 -
Helena Rodilla, Josip Vukusic, Jan Stake, Anna Kim, Gavin Jeffries, Aldo Jesorka, Junsheng Yang, Ida Lundholm, Weixiao Yuan Wahlgren, Åsa Persson, Gergely Katona, Richard Neutze, Thomas Nyström, Andrew G Ewing
Swedish Microwave Days. Gigahertz Symposium, March 11-12, 2014. Gothenburg, Sweden - 2014 -
Andrea Bodor, László Radnai, Csaba Hetényi, Péter Rapali, András Láng, Katalin E Kövér, András Perczel, Weixiao Yuan Wahlgren, Gergely Katona, László Nyitray
Biochemistry - 2014 -
David Arnlund, Linda C Johansson, Cecilia Wickstrand, A. Barty, G. J. Williams, Erik Malmerberg, J. Davidsson, D. Milathianaki, D. P. Deponte, R. L. Shoeman, D. J. Wang, D. James, Gergely Katona, Sebastian Westenhoff, T. A. White, A. Aquila, S. Bari, Peter Berntsen, M. Bogan, T. B. van Driel, R. B. Doak, K. S. Kjaer, M. Frank, R. Fromme, I. Grotjohann, R. Henning, M. S. Hunter, R. A. Kirian, I. Kosheleva, C. Kupitz, M. N. Liang, A. V. Martin, M. M. Nielsen, M. Messerschmidt, M. M. Seibert, Jennie Sjöhamn, F. Stellato, U. Weierstall, N. A. Zatsepin, J. C. H. Spence, P. Fromme, I. Schlichting, S. Boutet, G. Groenhof, H. N. Chapman, Richard Neutze
Nature Methods - 2014 -
Ida Lundholm, Weixiao Yuan Wahlgren, F. Piccirilli, P. Di Pietro, Annette Duelli, Oskar Berntsson, S. Lupi, A. Perucchi, Gergely Katona
Rsc Advances - 2014 -
Annette Duelli, Bence Kiss, Ida Lundholm, Andrea Bodor, Maxim V Petoukhov, Dmitri I Svergun, László Nyitray, Gergely Katona
PLoS ONE - 2014 -
Linda C Johansson, David Arnlund, Gergely Katona, Thomas A White, Anton Barty, Daniel P DePonte, Robert L Shoeman, Cecilia Wickstrand, Amit Sharma, Garth J Williams, Andrew Aquila, Michael J Bogan, Carl Caleman, Jan Davidsson, R Bruce Doak, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S Hunter, Stephan Kassemeyer, Richard A Kirian, Christopher Kupitz, Mengning Liang, Lukas Lomb, Erik Malmerberg, Andrew V Martin, Marc Messerschmidt, Karol Nass, Lars Redecke, M Marvin Seibert, Jennie Sjöhamn, Jan Steinbrener, Francesco Stellato, Dingjie Wang, Weixiao Yuan Wahlgren, Uwe Weierstall, Sebastian Westenhoff, Nadia A Zatsepin, Sébastien Boutet, John C H Spence, Ilme Schlichting, Henry N Chapman, Petra Fromme, Richard Neutze
Nature communications - 2013 -
Tamás Molnár, Judit Vörös, Bálint Szeder, Kornél Takáts, József Kardos, Gergely Katona, László Gráf
The FEBS journal - 2013 -
Lars Redecke, Karol Nass, Daniel P DePonte, Thomas A White, Dirk Rehders, Anton Barty, Francesco Stellato, Mengning Liang, Thomas R M Barends, Sébastien Boutet, Garth J Williams, Marc Messerschmidt, M Marvin Seibert, Andrew Aquila, David Arnlund, Sasa Bajt, Torsten Barth, Michael J Bogan, Carl Caleman, Tzu-Chiao Chao, R Bruce Doak, Holger Fleckenstein, Matthias Frank, Raimund Fromme, Lorenzo Galli, Ingo Grotjohann, Mark S Hunter, Linda C Johansson, Stephan Kassemeyer, Gergely Katona, Richard A Kirian, Rudolf Koopmann, Chris Kupitz, Lukas Lomb, Andrew V Martin, Stefan Mogk, Richard Neutze, Robert L Shoeman, Jan Steinbrener, Nicusor Timneanu, Dingjie Wang, Uwe Weierstall, Nadia A Zatsepin, John C H Spence, Petra Fromme, Ilme Schlichting, Michael Duszenko, Christian Betzel, Henry N Chapman
91̽»¨ (New York, N.Y.) - 2013 -
Bence Kiss, Annette Duelli, László Radnai, Katalin A Kékesi, Gergely Katona, László Nyitray
Proceedings of the National Academy of 91̽»¨s of the United States of America - 2012 -
Weixiao Yuan Wahlgren, Hadil Omran, D. von Stetten, A. Royant, Sjoerd van der Post, Gergely Katona
Plos One - 2012 -
Linda C Johansson, David Arnlund, Thomas A White, Gergely Katona, Daniel P DePonte, Uwe Weierstall, R Bruce Doak, Robert L Shoeman, Lukas Lomb, Erik Malmerberg, Jan Davidsson, Karol Nass, Mengning Liang, Jakob Andreasson, Andrew Aquila, Saša Bajt, Miriam Barthelmess, Anton Barty, Michael J Bogan, Christoph Bostedt, John D Bozek, Carl Caleman, Ryan Coffee, Nicola Coppola, Tomas Ekeberg, Sascha W Epp, Benjamin Erk, Holger Fleckenstein, Lutz Foucar, Heinz Graafsma, Lars Gumprecht, Janos Hajdu, Christina Y Hampton, Robert Hartmann, Andreas Hartmann, Günter Hauser, Helmut Hirsemann, Peter Holl, Mark S Hunter, Stephan Kassemeyer, Nils Kimmel, Richard A Kirian, Filipe R N C Maia, Stefano Marchesini, Andrew V Martin, Christian Reich, Daniel Rolles, Benedikt Rudek, Artem Rudenko, Ilme Schlichting, Joachim Schulz, M Marvin Seibert, Raymond G Sierra, Heike Soltau, Dmitri Starodub, Francesco Stellato, Stephan Stern, Lothar Strüder, Nicusor Timneanu, Joachim Ullrich, Weixiao Yuan Wahlgren, Xiaoyu Wang, Georg Weidenspointner, Cornelia Wunderer, Petra Fromme, Henry N Chapman, John C H Spence, Richard Neutze
Nature methods - 2012 -
S. Boutet, L. Lomb, G. J. Williams, T. R. M. Barends, A. Aquila, R. B. Doak, U. Weierstall, D. P. Deponte, J. Steinbrener, R. L. Shoeman, M. Messerschmidt, A. Barty, T. A. White, S. Kassemeyer, R. A. Kirian, M. M. Seibert, P. A. Montanez, C. Kenney, R. Herbst, P. Hart, J. Pines, G. Haller, S. M. Gruner, H. T. Philipp, M. W. Tate, M. Hromalik, L. J. Koerner, N. van Bakel, J. Morse, W. Ghonsalves, David Arnlund, M. J. Bogan, C. Caleman, R. Fromme, C. Y. Hampton, M. S. Hunter, Linda C Johansson, Gergely Katona, C. Kupitz, M. N. Liang, A. V. Martin, K. Nass, L. Redecke, F. Stellato, N. Timneanu, D. J. Wang, N. A. Zatsepin, D. Schafer, J. Defever, Richard Neutze, P. Fromme, J. C. H. Spence, H. N. Chapman, I. Schlichting
91̽»¨ - 2012 -
Weixiao Yuan Wahlgren, Gábor Pál, József Kardos, Pálma Porrogi, Borbála Szenthe, András Patthy, László Gráf, Gergely Katona
The Journal of biological chemistry - 2011 -
Erik Malmerberg, Ziad Omran, Jochen S Hub, Xuewen Li, Gergely Katona, Sebastian Westenhoff, Linda C Johansson, Magnus Andersson, Marco Cammarata, Michael Wulff, David van der Spoel, Jan Davidsson, Alexandre Specht, Richard Neutze
Biophysical journal - 2011 -
Péter Rapali, László Radnai, Dániel Süveges, Veronika Harmat, Ferenc Tölgyesi, Weixiao Yuan Wahlgren, Gergely Katona, László Nyitray, Gábor Pál
PloS one - 2011 -
Annemarie Wöhri, Gergely Katona, Linda C Johansson, Emelie Fritz, Erik Malmerberg, Magnus Andersson, J. Vincent, M. Eklund, M. Cammarata, M. Wulff, J. Davidsson, G. Groenhof, Richard Neutze
91̽»¨ - 2010 -
Sebastian Westenhoff, Elena Nazarenko, Erik Malmerberg, Jan Davidsson, Gergely Katona, Richard Neutze
Acta crystallographica. Section A, Foundations of crystallography - 2010 -
Sebastian Westenhoff, Erik Malmerberg, David Arnlund, Linda C Johansson, Elena Nazarenko, Marco Cammarata, Jan Davidsson, Vincent Chaptal, Jeff Abramson, Gergely Katona, Andreas Menzel, Richard Neutze
Nature methods - 2010 -
Magnus Andersson, Erik Malmerberg, Sebastian Westenhoff, Gergely Katona, Marco Cammarata, Annemarie Wöhri, Linda C Johansson, Friederike Ewald, Mattias Eklund, Michael Wulff, Jan Davidsson, Richard Neutze
Structure (London, England : 1993) - 2009 -
Linda C Johansson, Annemarie Wöhri, Gergely Katona, Sven Engström, Richard Neutze
Current Opinion in Structural Biology - 2009 -
Dominique Bourgeois, Gergely Katona, Eve de Rosny, Philippe Carpentier
Methods in molecular biology (Clifton, N.J.) - 2009 -
Annemarie Wöhri, Weixiao Yuan Wahlgren, Erik Malmerberg, Linda C Johansson, Richard Neutze, Gergely Katona
Biochemistry - 2009 -
Annemarie Wöhri, Linda C Johansson, Pia Wadsten-Hindrichsen, Weixiao Yuan Wahlgren, Gerhard Fischer, Rob Horsefield, Gergely Katona, Maria Nyblom, Fredrik Öberg, G Young, Richard Cogdell, N J Fraser, Sven Engström, Richard Neutze
Structure - 2008 -
Balazs Jelinek, Gergely Katona, Krisztian Fodor, Istvan Venekei, Laszlo Graf
Protein Journal - 2008 -
Selena G Burgess, Hanan Latif Messiha, Gergely Katona, Stephen E J Rigby, David Leys, Nigel S Scrutton
Biochemistry - 2008 -
Gergely Katona, Philippe Carpentier, Vincent Nivière, Patricia Amara, Virgile Adam, Jérémy Ohana, Nikolay Tsanov, Dominique Bourgeois
91̽»¨ (New York, N.Y.) - 2007 -
Krisztián Fodor, Veronika Harmat, Richard Neutze, László Szilágyi, László Gráf, Gergely Katona
Biochemistry - 2006 -
Pia Wadsten, Annemarie Wöhri, Arjan Snijder, Gergely Katona, Alastair T Gardiner, Richard J Cogdell, Richard Neutze, Sven Engström
Journal of molecular biology - 2006 -
Gergely Katona, Arjan Snijder, Pontus Gourdon, U Andreasson, Örjan Hansson, Lars-Erik Andreasson, Richard Neutze
Nature Structural & Molecular Biology - 2005 -
Jan Davidsson, Jens Aage Poulsen, Marco Cammarata, Panos Georgiou, Remco Wouts, Gergely Katona, Frida Jacobson, Anton Plech, Michael Wulff, Gunnar Nyman, Richard Neutze
Physical Review Letters - 2005 -
Krisztián Fodor, Veronika Harmat, Csaba Hetényi, József Kardos, József Antal, András Perczel, András Patthy, Gergely Katona, László Gráf
Journal of molecular biology - 2005 -
Gergely Katona
2004