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Matthias Obst
Researcher
Department of Marine 91̽sAbout Matthias Obst
Research
Marine ecosystems provide a large amount of essential goods and services to our society and the quality of these products often directly depends on the biological diversity in these environments. Today, impacts from overexploitation and pollution of marine habitats as well as climate change cause substantial loss of biodiversity, reaching levels only comparable to the five major mass extinctions in Earth’s history. In my research I am establishing and testing harmonized and automated observation systems for biological diversity in the sea, spanning from molecular sensors (i.e. genomic observatories) to human sensors (i.e. citizen science). I am also developing methods and infrastructures that capture and integrate such data to enable inter-disciplinary research for the protection and management of our biological resources in the ocean.
Expertise
marine and benthic ecology, marine conservation biology, invertebrate phylogeny and systematics, marine phylogeography, molecular taxonomy, metabarcoding, phylogenomics, metagenomics, e-science, zoomorphology, ecological niche modeling
Projects and program initiatives
I have currently active roles in numerous European infrastructure projects (, ) as well as ESFRI program initiatives ()
I am currently consortium chair of the Swedish LifeWatch initiative ()
I am member of the The Linnaeus Centre for Marine Evolutionary Biology (cemeb.science.gu.se)
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Leon Green, Marina Panova, Thomas G. Dahlgren, Alizz Axberg, Matthias Obst, Per Sundberg
ENVIRONMENTAL DNA - 2025 -
Justine Pagnier, Nauras Daraghmeh, Matthias Obst
BIOLOGICAL INVASIONS - 2025 -
Nauras Daraghmeh, Katrina Exter, Justine Pagnier, Piotr Balazy, Ibon Cancio, Giorgos Chatzigeorgiou, Eva Chatzinikolaou, Maciej Chelchowski, Nathan Alexis Mitchell Chrismas, Thierry Comtet, Thanos Dailianis, Klaas Deneudt, Oihane Diaz de Cerio, Markos Digenis, Vasilis Gerovasileiou, José González, Laura Kauppi, Jon Bent Kristoffersen, Piotr Kukliński, Rafał Lasota, Liraz Levy, Magdalena Małachowicz, Borut Mavrič, Jonas Mortelmans, Estefania Paredes, Anita Poćwierz-Kotus, Henning Reiss, Ioulia Santi, Georgia Sarafidou, Grigorios Skouradakis, Jostein Solbakken, Peter A.U. Staehr, Javier Tajadura, Jakob Thyrring, Jesus S. Troncoso, Emmanouela Vernadou, Frederique Viard, Haris Zafeiropoulos, Małgorzata Zbawicka, Christina Pavloudi, Matthias Obst
Molecular Ecology Resources - 2025 -
Per Sundberg, Marty Breidenbach, Nauras Daraghmeh, Tim Dorup, Marina Panova, Matthias Obst
Länsstyrelsen Stockholms rapportserie - 2024 -
Matteo Cecchetto, Agnès Dettai, Cyril Gallut, Matthias Obst, Piotr Kuklinski, Piotr Balazy, Maciej Chelchowski, Magdalena Małachowicz, Anita Poćwierz-Kotus, Małgorzata Zbawicka, Henning Reiss, Marc P. Eléaume, Gentile Francesco Ficetola, Christina Pavloudi, Katrina Exter, Diego Fontaneto, Stefano Schiaparelli
Nature Communications - 2024 -
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Rasmus Martaeng, Matthias Obst, P. Kuklinski
Hydrobiologia - 2023 -
I. Santi, O. Beluche, M. Beraud, P. L. Buttigieg, R. Casotti, C. J. Cox, M. Cunliffe, N. Davies, O. D. de Cerio, K. Exter, A. E. Kervella, G. Kotoulas, R. Lagaisse, A. Laroquette, B. Louro, F. Not, Matthias Obst, C. Pavloudi, J. Poulain, K. Praebel, J. Vanaverbeke, N. Pade
Frontiers in Marine 91̽ - 2023 -
Per Sundberg, Alizz Axberg, Nauras Daraghmeh, Marina Panova, Matthias Obst
Havs och Vattenmyndigheten - 2022 -
Russell J.S. Orr, Emanuela Di Martino, Mali H. Ramsfjell, Dennis P. Gordon, Björn Berning, Ismael Chowdhury, Sean Craig, Robyn L. Cumming, Blanca Figuerola, Wayne Florence, Jean Georges Harmelin, Masato Hirose, Danwei Huang, Sudhanshi S. Jain, Helen L. Jenkins, Olga N. Kotenko, Piotr Kuklinski, Hannah E. Lee, Teresa Madurell, Linda McCann, Hannah L. Mello, Matthias Obst, Andrew N. Ostrovsky, Gustav Paulay, Joanne S. Porter, Natalia N. Shunatova, Abigail M. Smith, Javier Souto-Derungs, Leandro M. Vieira, Kjetil L. Voje, Andrea Waeschenbach, Kamil Zágoršek, Rachel C.M. Warnock, Lee Hsiang Liow
91̽ Advances - 2022 -
Peter A. U. Staehr, Karsten Dahl, Helle Buur, Cordula Göke, Rumakanta Sapkota, Anne Winding, Marina Panova, Matthias Obst, Per Sundberg
Frontiers in Marine 91̽ - 2022 -
Katharina Rettig, Andreas Skriver Hansen, Matthias Obst, Dainel Herring, Christian K. Feld
Estuarine, Coastal and Shelf 91̽ - 2022 -
A. Abreu, E. Bourgois, A. Gristwood, R. Trouble, S. G. Acinas, P. Bork, E. Boss, C. Bowler, M. Budinich, S. Chaffron, C. de Vargas, T. O. Delmont, D. Eveillard, L. Guidi, D. Iudicone, S. Kandels, H. Morlon, F. Lombard, R. Pepperkok, J. J. P. Karlusich, G. Piganeau, A. Regimbeau, G. Sommeria-Klein, L. Stemmann, M. B. Sullivan, S. Sunagawa, P. Wincker, O. Zablocki, D. Arendt, J. Bilic, R. Finn, E. Heard, B. Rouse, J. Vamathevan, R. Casotti, I. Cancio, M. Cunliffe, A. E. Kervella, Whcf Kooistra, Matthias Obst, N. Pade, D. M. Power, I. Santi, T. M. Tsagaraki, J. Vanaverbeke
Nature Microbiology - 2022 -
Andreas Skriver Hansen, Katharina Rettig, Matthias Obst, Carl Dahlberg, Daniel Hering, Christian Feld
Presentation given at ECSA 59, 5-8 September 2022, Kursaal, San Sebastian, Spain - 2022 -
Victor Anton, Jannes Germishuys, Per Bergström, Mats Lindegarth, Matthias Obst
Biodiversity Data Journal - 2021 -
Russell J.S. Orr, Maja M. Sannum, Sanne Boessenkool, Emanuela Di Martino, Dennis P. Gordon, Hannah L. Mello, Matthias Obst, Mali H. Ramsfjell, Abigail M. Smith, Lee Hsiang Liow
Ecology and Evolution - 2021 -
Z. Mohammadi, M. Aliabadian, F. Ghorbani, F. Y. Moghaddam, A. A. Lissovsky, Matthias Obst, Urban Olsson
Journal of Mammalian Evolution - 2020 -
Matthias Obst, K. Exter, A. L. Allcock, C. Arvanitidis, Alizz Axberg, M. Bustamante, I. Cancio, D. Carreira-Flores, E. Chatzinikolaou, G. Chatzigeorgiou, N. Chrismas, M. S. Clark, T. Comtet, T. Dailianis, N. Davies, K. Deneudt, O. D. de Cerio, A. Fortic, V. Gerovasileiou, P. I. Hablutzel, K. Keklikoglou, G. Kotoulas, R. Lasota, B. R. Leite, S. Loisel, L. Leveque, L. Levy, M. Malachowicz, B. Mavric, C. Meyer, J. Mortelmans, J. Norkko, N. Pade, A. M. Power, A. Ramsak, H. Reiss, J. Solbakken, P. A. Stoehr, Per Sundberg, J. Thyrring, J. S. Troncoso, F. Viard, R. Wenne, E. L. Yperifanou, M. Zbawicka, C. Pavloudi
Frontiers in Marine 91̽ - 2020 -
Matthias Obst
Biodiversity Information 91̽ and Standards - 2019 -
Rikard Karlsson, Matthias Obst, Matz Berggren
Biological Invasions - 2019 -
S. Vestbo, Matthias Obst, F. J. Q. Fernandez, I. Intanai, P. Funch
Frontiers in Marine 91̽ - 2018 -
Matthias Obst, Saverio Vicario, Kennet Lundin, Matz S. Berggren, Anna Karlsson, Robert Haines, Alan Williams, Carole Goble, Cherian Mathew, Anton Güntsch
Marine Biodiversity - 2018 -
W. Daniel Kissling, Jorge A. Ahumada, Anne Bowser, Miguel Fernandez, Néstor Fernández, Enrique Alonso García, Robert P. Guralnick, Nick J.B. Isaac, Steve Kelling, Wouter Los, Louise Mcrae, Jean Baptiste Mihoub, Matthias Obst, Monica Santamaria, Andrew K. Skidmore, Kristen J. Williams, Donat Agosti, Daniel Amariles, Christos Arvanitidis, Lucy Bastin, Francesca De Leo, Willi Egloff, Jane Elith, Donald Hobern, David Martin, Henrique M. Pereira, Graziano Pesole, Johannes Peterseil, Hannu Saarenmaa, Dmitry Schigel, Dirk S. Schmeller, Nicola Segata, Eren Turak, Paul F. Uhlir, Brian Wee, Alex R. Hardisty
Biological Reviews - 2018 -
Alex R. Hardisty, Finn Bacall, Niall Beard, Maria Paula Balcázar-Vargas, Bachir Balech, Zoltán Barcza, Sarah Bourlat, Renato Giovanni, Yde Jong, Francesca Leo, Laura Dobor, Giacinto Donvito, Donal Fellows, Antonio Fernandez Guerra, Nuno Ferreira, Yuliya Fetyukova, Bruno Fosso, Jonathan Giddy, Carole Goble, Anton Güntsch, Robert Haines, Vera Hernández Ernst, Hannes Hettling, Dóra Hidy, Ferenc Horváth, Dóra Ittzés, Péter Ittzés, Andrew Jones, Renzo Kottmann, Robert Kulawik, Sonja Leidenberger, Päivi Lyytikäinen-Saarenmaa, Cherian Mathew, Norman Morrison, Aleksandra Nenadic, Abraham Nieva Hidalga, Matthias Obst, Gerard Oostermeijer, Elisabeth Paymal, Graziano Pesole, Salvatore Pinto, Axel Poigné, Francisco Quevedo Fernandez, Monica Santamaria, Hannu Saarenmaa, Gergely Sipos, Karl Heinz Sylla, Marko Tähtinen, Saverio Vicario, Rutger Aldo Vos, Alan R. Williams, Pelin Yilmaz
BMC Ecology - 2016 -
L. Schreiber, K. U. Kjeldsen, P. Funch, J. Jensen, Matthias Obst, S. Lopez-Legentil, A. Schramm
Frontiers in Microbiology - 2016 -
D Koureas, C Arvanitidis, L Belbin, WG Berendsohn, C Damgaard, QJ Groom, A Güntsch, G Hagedorn, A Hardisty, Matthias Obst
Research Ideas and Outcomes - 2016 -
Lars Schreiber, Kasper Urup Kjeldsen, Matthias Obst, Peter Funch, Andreas Schramm
Systematic and Applied Microbiology - 2016 -
Sonja Leidenberger, Matthias Obst, Robert Kulawik, Kerstin Stelzer, Karin Heyer, Alex Hardisty, Sarah Bourlat
Marine Pollution Bulletin - 2015 -
Ane T Laugen, Hollander Johan, Matthias Obst, Åsa Strand
Biological Invasions in Changing Ecosystems: Vectors, Ecological Impacts, Management and Predictions. - 2015 -
N. Davies, D Field, L. Amaral-Zettler, K. Barker, M. Bicak, Sarah Bourlat, J. Coddington, J. Deck, A. Drummond, J. Gilbert, F-O Glockner, R. Kottmann, C. Meyer, N. Morrison, Matthias Obst, R. Robbins, L. M. Schriml, P. Sterk, S. Stones-Havas
Standards in Genomic 91̽s - 2014 -
Ulf Gärdenfors, Mari Jönsson, Matthias Obst, Anna Maria Wremp, Oskar Kindvall, Johan Nilsson
Human Computation - 2014 -
Cherian Mathew, Anton Guentsch, Matthias Obst, Saverio Vicario, Robert Haines, Alan R Williams, Yde de Jong, Carole Goble
Biodiversity Data Journal - 2014 -
Alberto González-Talaván, Cherian Mathew, Matthias Obst, Elisabeth Paymal
2014 -
Neil Davies, Dawn Field, Linda Amaral-Zettler, Melody S Clark, John Deck, Alexei Drummond, Daniel P Faith, Jonathan Geller, Jack Gilbert, Frank O Glöckner, Penny R Hirsch, Jo-Ann Leong, Chris Meyer, Matthias Obst, Serge Planes, Chris Scholin, Alfried P Vogler, Ruth D Gates, Rob Toonen, Véronique Berteaux-Lecellier, Michèle Barbier, Katherine Barker, Stefan Bertilsson, Mesude Bicak, Matthew J Bietz, Jason Bobe, Levente Bodrossy, Angel Borja, Jonathan Coddington, Jed Fuhrman, Gunnar Gerdts, Rosemary Gillespie, Kelly Goodwin, Paul C Hanson, Jean-Marc Hero, David Hoekman, Janet Jansson, Christian Jeanthon, Rebecca Kao, Anna Klindworth, Rob Knight, Renzo Kottmann, Michelle S Koo, Georgios Kotoulas, Andrew J Lowe, Viggó T Marteinsson, Folker Meyer, Norman Morrison, David D Myrold, Evangelos Pafilis, Stephanie Parker, John J Parnell, Paraskevi N Polymenakou, Sujeevan Ratnasingham, George K Roderick, Naiara Rodriguez-Ezpeleta, Karsten Schonrogge, Nathalie Simon, Nathalie J Valette-Silver, Yuri P Springer, Graham N Stone, Steve Stones-Havas, Susanna-Assunta Sansone, Kate M Thibault, Patricia Wecker, Antje Wichels, John C Wooley, Tetsukazu Yahara, Adriana Zingone
Giga91̽ - 2014 -
Kerstin Stelzer, Karin Heyer, Sarah Bourlat, Matthias Obst
2013 -
Holl Sonja, Garijo Daniel, Belhajjame Khalid, Zimmermann Olav, Giovanni Renato De, Matthias Obst, Goble Carole
Proceedings of the 8th Workshop on Workflows in Support of Large-Scale 91̽ - 2013 -
Hiroaki Nakano, K. Lundin, Sarah Bourlat, M. J. Telford, P. Funch, J. R. Nyengaard, Matthias Obst, Michael C. Thorndyke
Nature Communications - 2013 -
Stelzer Kerstin, Heyer Karin, Sarah Bourlat, Matthias Obst
2013 -
Sarah Bourlat, Angel Borja, Jack Gilbert, Martin I Taylor, Neil Davies, Stephen B Weisberg, John F Griffith, Teresa Lettieri, Dawn Field, John Benzie, Frank Oliver Glöckner, Naiara Rodríguez-Ezpeleta, Daniel P Faith, Tim P Bean, Matthias Obst
Marine pollution bulletin - 2013 -
Alex Hardisty, Dave Roberts, Bart Aelterman, Guy Cochrane, Noël Conruyt, David King, Wouter Los, Norman Morrison, Matthias Obst, Evagelos Pafilis, Duong Vu, Aaike De Wever
BMC ecology - 2013 -
Martin Moosbrugger, Thomas Schwaha, Manfred G Walzl, Matthias Obst, Andrew N Ostrovsky
Frontiers in zoology - 2012 -
C Mathew, V Hernandez-Ernst, A Güntsch, Sarah Bourlat, Matthias Obst
http://www.myexperiment.org/packs/267.html - 2012 -
Matthias Obst, Sören Faurby, Somchai Bussarawit, Peter Funch
Molecular Phylogenetics and Evolution - 2012 -
Matthias Obst, Hiroaki Nakano, S. J. Bourlat, Michael C. Thorndyke, M. J. Telford, J. R. Nyengaard, P. Funch
Acta Zoologica - 2011 -
Matthias Obst, Hiroaki Nakano, Sarah Bourlat, Michael C. Thorndyke
Acta Zoologica - 2011 -
Helen Nilsson Sköld, Matthias Obst
Biogerontology - 2011 -
Judith Fuchs, T Iseto, M Hirose, Per Sundberg, Matthias Obst
Molecular Phylogenetics and Evolution - 2010 -
S. Faurby, T. L. King, Matthias Obst, E. M. Hallerman, C. Pertoldi, P. Funch
Molecular Ecology - 2010 -
C Schander, HT Rapp, JA Kongsrud, T Bakken, J Berge, S Cochrane, E Oug, I Byrkjedal, C Todt, T Cedhagen, A Fosshagen, A Gebruk, K Larsen, L Levin, Matthias Obst, Fredrik Pleijel, S Stöhr, A Warén, NT Mikkelsen, S Hadler-Jacobsen, R Keuning, KH Petersen, IH Thorseth, RB Pedersen
Marine Biology Research - 2010 -
Kasper Urup Kjeldsen, Matthias Obst, Hiroaki Nakano, Peter Funch, Andreas Schramm
Applied and Environmental Microbiology - 2010 -
G Giribet, C Dunn, G Edgecombe, A Hejnol, R Kristensen, M Martindale, Matthias Obst, G Rouse, E Seaver, M Sorensen, W Wheeler, K Worsaae
Cladistics - 2010 -
A Hejnol, Matthias Obst, A Stamatakis, M Ott, GW Rouse, GD Edgecombe, P Martinez, J Baguñà, X Bailly, U Jondelius, M Wiens, WEG Müller, E Seaver, WC Wheeler, MQ Martindale, G Giribet, CW Dunn
Proceedings of the Royal Society B - 2009 -
Judith Fuchs, Matthias Obst, Per Sundberg
Molecular Phylogenetics and Evolution - 2009 -
Helen Nilsson Sköld, Matthias Obst, Mattias Sköld, Bertil Åkesson
Stem Cells in Marine Organisms - 2009 -
Matthias Obst, Hiroaki Nakano, Sarah Bourlat, Michael C. Thorndyke, M. J. Telford, J. R. Nyengaard, P. Funch
Journal of Morphology - 2008 -
Sarah Bourlat, Hiroaki Nakano, M. Akerman, M. J. Telford, Michael C. Thorndyke, Matthias Obst
Molecular Ecology Resources - 2008 -
Hiroaki Nakano, Sarah Bourlat, Matthias Obst, Ako Nakano, M. Telford, Michael C. Thorndyke
Journal of Morphology - 2008 -
Judith Fuchs, Matthias Obst, Per Sundberg
Journal of Morphology - 2008 -
Hiroaki Nakano, S. Bourlat, Matthias Obst, Ako Nakano, Maximilian Telford, Michael C. Thorndyke
J. Morphol. - 2008 -
Matthias Obst, Hiroaki Nakano, SJ Bourlat, MT Thorndike, MJ Telford, JR Nyengaard, P Funch
Journal of Morphology - 2008 -
Sarah Bourlat, Hiroaki Nakano, Marie Akerman, Maximilian Telford, Michael C. Thorndyke, Matthias Obst
Molecular Ecology Resources - 2008 -
CW Dunn, A Hejnol, D Matus, K Pang, W Browne, S Smith, E Seaver, G Rouse, Matthias Obst, GD Edgecombe, MV Sorensen, S Haddock, A Schmidt-Rhaesa, A Okusu, RM Kristensen, WC Wheeler, MQ Martindale, G Giribet
Journal of Morphology - 2008 -
P. Funch, Peter Thor, Matthias Obst
Vie Et Milieu-Life and Environment - 2008 -
Casey W Dunn, Andreas Hejnol, David Q Matus, Kevin Pang, William E Browne, Stephen A Smith, Elaine Seaver, Greg W Rouse, Matthias Obst, Gregory D Edgecombe, Martin V Sørensen, Steven H D Haddock, Andreas Schmidt-Rhaesa, Akiko Okusu, Reinhardt Møbjerg Kristensen, Ward C Wheeler, Mark Q Martindale, Gonzalo Giribet
Nature - 2008 -
Michael C. Thorndyke, Samuel Dupont, Karen Wilson, Matthias Obst, Helen Nilsson Sköld, Hiroaki Nakano
Marine Ecology Progress Series - 2007 -
Matthias Obst, Judith Fuchs
Flora och Fauna - 2007 -
Matthias Obst, P. Funch, R. Møbjerg Kristensen
Organisms Diversity and Evolution - 2006