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- Erik Lekholm
Erik Lekholm
Professor
Department of Medical Biochemistry and Cell biologyAbout Erik Lekholm
Erik Larsson Lekholm is a Professor of Bioinformatics at the Institute of Biomedicine.
More information
Larsson Lekholm Research Group at the Dept. of Medical Biochemistry & Cell Biology.
Select publications
Elliott K, Singh VK, Bäckerholm A, Ögren L, Lindberg M, Soczek KM, Hoberg E, Luijts T, Van den Eynden J, Falkenberg M, Doudna J, Ståhlberg A, Larsson E. Mechanistic basis of atypical TERT promoter mutations. Nature Communications. 2024 Nov 18;15(1):9965.
Elliott K, Singh VK, Boström M, Larsson E. Base-resolution UV footprinting by sequencing reveals distinctive damage signatures for DNA-binding proteins. Nature Communications. 2023 May 11;14(1):2701.
Boström M, Larsson E. Somatic mutation distribution across tumour cohorts provides a signal for positive selection in cancer. Nature Communications. 2022 Nov 17;13(1):7023.
Elias E, Ardalan A, Lindberg M, Reinsbach SE, Muth A, Nilsson O, Arvidsson Y, Larsson E. Independent somatic evolution underlies clustered neuroendocrine tumors in the human small intestine. Nature Communications. 2021 Nov 4;12(1):6367
Elliott K, Larsson E. Non-coding driver mutations in human cancer. Nature Rev Cancer. 2021 Aug;21(8):500-509. (review)
Van den Eynden J, Jiménez-Sánchez A, Miller ML, Larsson E. Lack of detectable neoantigen depletion signals in the untreated cancer genome. Nature Genetics. 2019 Dec;51(12):1741-1748.
Lindberg M, Boström M, Elliott K, Larsson E. Intragenomic variability and extended sequence patterns in the mutational signature of ultraviolet light. Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20411-20417.
Persson Ö, Muthukumar Y, Basu S, Jenninger L, Uhler JP, Berglund AK, McFarland R, Taylor RW, Gustafsson CM, Larsson E*, Falkenberg M*. Copy-choice recombination during mitochondrial L-strand synthesis causes DNA deletions. Nature Communications. 2019 Feb 15;10(1):759.
Alaei-Mahabadi B, Bhaduryb J, Karlsson JW, Nilsson JA, Larsson E. Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. Proc Natl Acad Sci U S A. 2016 Nov.
Ashouri A, Sayin VI, Van den Eynden J, Singh SX, Papagiannakopoulos T, Larsson E. Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events. Nature Communications. 2016 Oct 25;7:13197
Fredriksson NJ, Ny L, Nilsson JA, Larsson E. Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. Nature Genetics. 2014 Dec;46(12):1258-63
Tang K, Alaei-Mahabadi B, Samuelsson T, Lindh M, Larsson E. The landscape of viral expression and host gene fusion and adaptation in human cancer. Nature Communications. 2013 4:2513
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Kerryn Elliott, Vinod Kumar Singh, Alan Bäckerholm, Linnea Ögren, Markus Lindberg, Katarzyna M Soczek, Emily Hoberg, Tom Luijts, Jimmy Van den Eynden, Maria Falkenberg, Jennifer Doudna, Anders Ståhlberg, Erik Larsson
Nature communications - 2024 -
Mara Mennuni, Stephen E. Wilkie, Pauline Michon, David Alsina, Roberta Filograna, Markus Lindberg, David E. Sanin, Florian Rosenberger, Alina Schaaf, Erik Larsson, Erika L. Pearce, Nils-Goeran Larsson
SCIENCE ADVANCES - 2024 -
Kerryn Elliott, Vinod Kumar Singh, Martin Boström, Erik Larsson
Nature Communications - 2023 -
Martin Boström, Erik Larsson
Nature communications - 2022 -
Tom Luijts, Kerryn Elliott, Joachim T. Siaw, J. Van de Velde, E. Beyls, A. Claeys, T. Lammens, Erik Larsson, W. Willaert, A. Vral, J. Van den Eynden
Scientific Reports - 2022 -
Patricia Mendoza, Swaraj Basu, Sanjay Sukumar, Badrul Arefin, Georg Wolfstetter, Vimala Anthonydhason, Linnea Molander, Ezgi Uçkun, Henrik Lindehell, Cristina Lebrero-Fernandez, Jan Larsson, Erik Larsson, Mats Bemark, Ruth H. Palmer
Development (Cambridge, England) - 2021 -
Kerryn Elliott, Erik Larsson
Nature reviews. Cancer - 2021 -
Erik Elias, Arman Ardalan, Markus Lindberg, Susanne E Reinsbach, Andreas Muth, Ola Nilsson, Yvonne Arvidsson, Erik Larsson
Nature communications - 2021 -
Carola Oldfors Hedberg, Ulrika Lindgren, Swaraj Basu, Kittichate Visuttijai, Christopher Lindberg, Maria Falkenberg, Erik Larsson Lekholm, Anders Oldfors
Brain Pathology - 2021 -
Göran Landberg, Emma Jonasson, Anna Gustafsson, Paul A. Fitzpatrick, Pauline Isakson, Joakim Karlsson, Erik Larsson, Andreas Svanström, Svanheidur Rafnsdottir, Emma Persson, Daniel Andersson, J. Rosendahl, S. Petronis, Parmida Ranji, Pernilla Gregersson, Ylva Magnusson, J. Hakansson, Anders Ståhlberg
Data in Brief - 2020 -
Carola Oldfors Hedberg, Bertil Macao, Swaraj Basu, Christopher Lindberg, Bradley Peter, Jay (Jennifer) Uhler, Erik Larsson, Maria Falkenberg, Anders Oldfors
Neurology. Genetics - 2020 -
Babak Alaei-Mahabadi, Kerryn Elliott, Erik Larsson
Scientific Reports - 2020 -
Joakim Karlsson, Lisa M Nilsson, Suman Mitra, Samuel Alsén, Ganesh V Shelke, Vasu R. Sah, Elin Forsberg, Ulrika Stierner, C. All-Eriksson, Berglind Osk Einarsdottir, Henrik Jespersen, Lars Ny, Per Lindnér, Erik Larsson, Roger Olofsson Bagge, Jonas A Nilsson
Nature Communications - 2020 -
Swaraj Basu, Xie Xie, Jay (Jennifer) Uhler, Carola Oldfors Hedberg, D. Milenkovic, O. R. Baris, S. Kimoloi, S. Matic, J. B. Stewart, N. G. Larsson, R. J. Wiesner, Anders Oldfors, Claes M Gustafsson, Maria Falkenberg, Erik Larsson
PLoS Genetics - 2020 -
Zhiyuan V. Zou, Nadia Gul, Markus Lindberg, Abdulmalik Bokhari, Ella M. Eklund, Viktor Garellick, Angana A. H. Patel, Jozefina J. Dzanan, Ben Titmuss, Kristell Le Gal, Inger Johansson, Åsa Tivesten, Eva Forssell-Aronsson, Martin O. Bergö, Anna Staffas, Erik Larsson, Volkan I. Sayin, Per Lindahl
Scientific Reports - 2020 -
Emma Jonasson, Salim Ghannoum, Emma Persson, Joakim Karlsson, Thomas Kroneis, Erik Larsson, Göran Landberg, Anders Ståhlberg
Frontiers in Genetics - 2019 -
Markus Lindberg, Martin Boström, Kerryn Elliott, Erik Larsson
Proceedings of the National Academy of 91̽»¨s of the United States of America - 2019 -
Nadia Gul, Joakim Karlsson, Carolina Tängemo, Sanna Linsefors, Samuel Tuyizere, Rosie Perkins, Chandu Ala, Zhiyuan V. Zou, Erik Larsson, M. O. Bergo, Per Lindahl
Scientific Reports - 2019 -
Örjan Persson, Yazh Muthukumar, Swaraj Basu, Louise Jenninger, Jay (Jennifer) Uhler, Anna-Karin Berglund, R. McFarland, R. W. Taylor, Claes M Gustafsson, Erik Larsson, Maria Falkenberg
Nature Communications - 2019 -
Jimmy Van den Eynden, Alejandro Jiménez-Sánchez, Martin L Miller, Erik Larsson
Nature genetics - 2019 -
Katrin Kreisel, Martin K M Engqvist, Josephine Kalm, Liam J. Thompson, Martin Boström, Clara Navarrete, John P McDonald, Erik Larsson, Roger Woodgate, Anders R Clausen
Nucleic acids research - 2019 -
Berglind Osk Einarsdottir, Joakim Karlsson, Elin Söderberg, Mattias F Lindberg, Elisa Funck-Brentano, Henrik Jespersen, Siggeir Fannar Brynjólfsson, Roger Olofsson Bagge, Louise Carstam, M. Scobie, T. Koolmeister, O. Wallner, Ulrika Stierner, U. W. Berglund, Lars Ny, Lisa M Nilsson, Erik Larsson, T. Helleday, Jonas A Nilsson
Cell Death & Disease - 2018 -
Kerryn Elliott, Martin Boström, Stefan Filges, Markus Lindberg, Jimmy Van den Eynden, Anders Ståhlberg, Anders R Clausen, Erik Larsson
PLoS genetics - 2018 -
Jimmy Van den Eynden, Ganesh Umapathy, Arghavan Ashouri, Diana Lizeth Cervantes-Madrid, Joanna Szydzik, Kristina Ruuth, Jan Koster, Erik Larsson, Jikui Guan, Ruth H. Palmer, Bengt Hallberg
91̽»¨ signaling - 2018 -
Swaraj Basu, Erik Larsson
G3-Genes Genomes Genetics - 2018 -
J. T. Serviss, N. Andrews, Jimmy Van den Eynden, F. C. Richter, M. Houtman, M. Vesterlund, L. Schwarzmueller, P. Johnsson, Erik Larsson, D. Grander, K. P. Tamm
Cell Death & Disease - 2018 -
Thomas J. Nicholls, C. A. Nadalutti, E. Motori, E. W. Sommerville, G. S. Gorman, Swaraj Basu, Emily Hoberg, D. M. Turnbull, P. F. Chinnery, N. G. Larsson, Erik Larsson, Maria Falkenberg, R. W. Taylor, J. D. Griffith, Claes M Gustafsson
Molecular Cell - 2018 -
Joakim Karlsson, Thomas Kroneis, Emma Jonasson, Erik Larsson, Anders Ståhlberg
Journal of molecular biology - 2017 -
Nils J Fredriksson, Kerryn Elliott, Stefan Filges, Jimmy Van den Eynden, Anders Ståhlberg, Erik Larsson
Plos Genetics - 2017 -
Ka-Wei Tang, Erik Larsson
Philosophical Transactions of the Royal Society B-Biological 91̽»¨s - 2017 -
Julia Morud, Arghavan Ashouri, Erik Larsson, Mia Ericson, Bo Söderpalm
Plos One - 2017 -
Jimmy Van den Eynden, Erik Larsson
Frontiers in Genetics - 2017 -
G. Sisino, A. X. Zhou, Niklas Dahr, A. Sabirsh, M. M. Soundarapandian, R. Perera, Erik Larsson, M. C. Magnone, M. Althage, B. Tyrberg
Plos One - 2017 -
Arghavan Ashouri, Volkan I. Sayin, Jimmy Van den Eynden, S. X. Singh, T. Papagiannakopoulos, Erik Larsson
Nature Communications - 2016 -
Jimmy Van den Eynden, Swaraj Basu, Erik Larsson
Plos Genetics - 2016 -
Tiange Lang, Sofia Klasson, Erik Larsson, Malin E V Johansson, Gunnar C. Hansson, Tore Samuelsson
Molecular Biology and Evolution - 2016 -
Babak Alaei-Mahabadi, Joydeep Bhadury, Joakim Karlsson, Jonas Nilsson, Erik Larsson
Proceedings of the National Academy of 91̽»¨s of the United States of America - 2016 -
Joakim Karlsson, Erik Larsson
Nucleic acids research - 2016 -
Sashidar Bandaru, Julia Grönros, Björn Redfors, Cağlar Cil, David Pazooki, Reza Salimi, Erik Larsson, Alex-Xianghua Zhou, Elmir Omerovic, Levent Akyürek
Cardiovascular Research - 2015 -
James B Stewart, Babak Alaei-Mahabadi, Radhakrishnan Sabarinathan, Tore Samuelsson, Jan Gorodkin, Claes M Gustafsson, Erik Larsson
PLoS genetics - 2015 -
Adil Mardinoglu, Saeed Shoaie, Mattias Bergentall, Pouyan Ghaffari Nouran, C. Zhang, Erik Larsson, Fredrik Bäckhed, Jens B. Nielsen
Molecular Systems Biology - 2015 -
Sujitha Duggimpudi, Erik Larsson, Schafiq Nabhani, Arndt Borkhardt, Jessica I Hoell
PloS one - 2015 -
Ka-Wei Tang, Kristoffer Hellstrand, Erik Larsson
International journal of cancer. Journal international du cancer - 2015 -
Volkan I. Sayin, Mohamed X Ibrahim, Erik Larsson, Jonas A Nilsson, Per Lindahl, Martin Bergö
91̽»¨ translational medicine - 2014 -
Gaurav Kumar Pandey, Sanhita Mitra, Santhilal Subhash, Falk Hertwig, Meena Kanduri, Kankadeb Mishra, Susanne Fransson, Abiarchana Ganeshram, Tanmoy Mondal, Sashidar Bandaru, Malin Östensson, Levent Akyürek, Jonas Abrahamsson, Susan Pfeifer, Erik Larsson, Leming Shi, Zhiyu Peng, Matthias Fischer, Tommy Martinsson, Fredrik Hedborg, Per Kogner, Chandrasekhar Kanduri
Cancer Cell - 2014 -
Johanna Nilsson, Adnan Halim, Erik Larsson, Ali-Reza Moslemi, Anders Oldfors, Göran Larson, Jonas Nilsson
Biochimica et biophysica acta - 2014 -
Nils J Fredriksson, Lars Ny, Jonas A Nilsson, Erik Larsson
Nature genetics - 2014 -
Meryet-Figuiere Matthieu, Babak Alaei-Mahabadi, Mohamad Moustafa Ali, Sanhita Mitra, Santhilal Subhash, Gaurav Kumar Pandey, Erik Larsson, Chandrasekhar Kanduri
Cell Cycle - 2014 -
Thalia A Farazi, Carl S Leonhardt, Neelanjan Mukherjee, Aleksandra Mihailovic, Song Li, Klaas E A Max, Cindy Meyer, Masashi Yamaji, Pavol Cekan, Nicholas C Jacobs, Stefanie Gerstberger, Claudia Bognanni, Erik Larsson, Uwe Ohler, Thomas Tuschl
RNA (New York, N.Y.) - 2014 -
Volkan I. Sayin, Anna Nilton, Mohamed X Ibrahim, Pia Ågren, Erik Larsson, Marleen MR Petit, Lillemor Mattsson Hultén, Marcus Ståhlman, Bengt R Johansson, Martin Bergö, Per Lindahl
Plos One - 2013 -
Anna Nilton, Volkan I. Sayin, Anna Staffas, Erik Larsson, Julia Rolf, Marleen MR Petit, Lars Palmqvist, Birgitta Swolin, Susanna Cardell, Per Lindahl
Plos One - 2013 -
Z. Kasza, P. F. Fuchs, C. Tamm, A. S. Eriksson, P. O'Callaghan, F. Heindryckx, D. Spillmann, Erik Larsson, S. Le Jan, I. Eriksson, P. Gerwins, L. Kjellen, J. Kreuger
Journal of Biological Chemistry - 2013 -
Erik Larsson, Björn Wahlstrand, B. Hedblad, Thomas Hedner, S. E. Kjeldsen, O. Melander, Per Lindahl
Plos One - 2013 -
Rozita Akrami, Anders Jacobsen, Jessica Hoell, Nikolaus Schultz, Chris Sander, Erik Larsson
PloS one - 2013 -
Ka-Wei Tang, Babak Alaei-Mahabadi, Tore Samuelsson, Magnus Lindh, Erik Larsson
Nature Communications - 2013 -
Babak Alaei-Mahabadi, Erik Larsson
Silence - 2013 -
J. J. Gao, B. A. Aksoy, U. Dogrusoz, G. Dresdner, B. Gross, S. O. Sumer, Y. C. Sun, A. Jacobsen, R. Sinha, Erik Larsson, E. Cerami, C. Sander, N. Schultz
91̽»¨ Signaling - 2013 -
Erik Larsson, Puja Shahrouki
Frontiers in Genetics - 2012 -
Erik Larsson, Valentina Tremaroli, Ying Shiuan Lee, Omry Koren, Intawat Nookaew, Ashwana Fricker, Jens B. Nielsen, Ruth E Ley, Fredrik Bäckhed
Gut - 2012 -
Chad J Creighton, Anadulce Hernandez-Herrera, Anders Jacobsen, Douglas A Levine, Parminder Mankoo, Nikolaus Schultz, Ying Du, Yiqun Zhang, Erik Larsson, Robert Sheridan, Weimin Xiao, Paul T Spellman, Gad Getz, David A Wheeler, Charles M Perou, Richard A Gibbs, Chris Sander, D Neil Hayes, Preethi H Gunaratne
PloS one - 2012 -
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson, Yevgeniy Antipin, Boris Reva, Arthur P Goldberg, Chris Sander, Nikolaus Schultz
Cancer discovery - 2012 -
Ashwini Jeggari, D. S. Marks, Erik Larsson
Bioinformatics - 2012 -
Erik Larsson
Proceedings of the National Academy of 91̽»¨ of the United States of America - 2011 -
Erik Larsson
Nature Structural & Molecular Biology - 2011 -
Lars O Karlsson, Xianghua Zhou, Erik Larsson, Karin Åström-Olsson, Chrichan Månsson, Levent Akyürek, Lars Grip
Journal of Cardiovascular Pharmacology and Therapeutics - 2010 -
Fei Tian, Xianghua Zhou, Anke M Smits, Erik Larsson, Marie-José Goumans, Carl-Henrik Heldin, Jan Borén, Levent Akyürek
Biochemical and Biophysical Research Communications - 2010 -
Aaron Arvey, Erik Larsson, Christina Leslie, Chris Sander, Debora Marks
Molecular Systems Biology - 2010 -
Erik Larsson, Chris Sander, Debora Marks
Molecular Systems Biology - 2010 -
Carolina E Hagberg, Annelie Falkevall, Xun Wang, Erik Larsson, Jenni Huusko, Ingrid Nilsson, Laurens A van Meeteren, Erik Samen, Li Lu, Maarten Vanwildemeersch, Joakim Klar, Guillem Genove, Kristian Pietras, Sharon Stone-Elander, Lena Claesson-Welsh, Seppo Ylä-Herttuala, Per Lindahl, Ulf Eriksson
Nature - 2010 -
Pontus Boström, Linda Andersson, Birgitte Vind, Liliana Håversen, Mikael Rutberg, Ylva Wickström, Erik Larsson, Per-Anders Jansson, M.K Svensson, Rickard Brånemark, Charlotte Ling, Henning Beck-Nielsen, Jan Borén, Kurt Højlund, Sven-Olof Olofsson
Diabetes - 2010 -
Annika Asplund, Pia Stillemark-Billton, Erik Larsson, Ellen Knutsen Rydberg, Jonatan Moses, Lillemor Mattsson Hultén, Björn Fagerberg, German Camejo, Göran Bondjers
Glycobiology - 2010 -
Sofie Mellberg, Anna Dimberg, Fuad Bahram, Makoto Hayashi, Emma Rennel, Adam Ameur, Jakub Orzechowski Westholm, Erik Larsson, Per Lindahl, Michael J Cross, Lena Claesson-Welsh
The FASEB journal - 2009 -
Erik Larsson, Peder Fredlund Fuchs, Johan Heldin, Irmeli Barkefors, Cecilia Bondjers, Guillem Genové, Christelle Arrondel, Pär Gerwins, Christine Kurschat, Bernhard Schermer, Thomas Benzing, Scott J Harvey, Johan Kreuger, Per Lindahl
Genome medicine - 2009 -
Erik Larsson
2009 -
Erik Larsson, Sean E McLean, Robert P Mecham, Per Lindahl, Sven Nelander
Molecular genetics and genomics : MGG - 2008 -
Marleen MR Petit, Henrik Lindskog, Erik Larsson, Per Wasteson, Elisabet Athley, Silke Breuer, Meike Angstenberger, David Hertfelder, Erney Mattsson, Alfred Nordheim, Sven Nelander, Per Lindahl
Circulation research - 2008 -
Elisabet Wallgard, Erik Larsson, Liqun He, Mats Hellström, Annika Armulik, Maya H Nisancioglu, Guillem Genove, Per Lindahl, Christer Betsholtz
Arteriosclerosis, thrombosis, and vascular biology - 2008 -
Erik Larsson, Xianghua Zhou, Levent Akyürek
Arteriosclerosis, Thrombosis, and Vascular Biology - 2007 -
Erik Larsson, Per Lindahl, Petter Mostad
BMC Bioinformatics - 2007 -
Henrik Lindskog, Elisabet Athley, Erik Larsson, Samuel B Lundin, Mats Hellström, Per Lindahl
Arteriosclerosis, thrombosis, and vascular biology - 2006 -
Sven Nelander, Erik Larsson, Erik Kristiansson, Robert MÃ¥nsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl
BMC genomics - 2005